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Fluorescent Information and Courses from MediaLab, Inc.

These are the MediaLab courses that cover Fluorescent and links to relevant pages within the course.

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Laboratories Individuals

CLIA Microbiology / Serology Review
Which of the following tests would be used to directly document the presence of a specific organism in a clinical specimen:View Page

Confirmatory and Secondary Urinalysis Screening Tests
Credibility of Results

The pH of the urine must be approximately 7 or less in order to avoid false negatives with this test. If the pH exceeds 7, add 33% acetic acid dropwise to acidify the specimen to a pH of 7. If the specimen is cloudy, it should be centrifuged before SSA reagent is added. Daylight or fluorescent light is recommended when interpreting results. Quality control checks should be performed by testing known negative and positive specimens or controls.

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Current Topics in Clinical Microbiology
Review 2

Smith KR, Fisher HC III, Hook, EW III: Prevalence of fluorescent monoclonal antibody-nonreactive Neisseria gonorrhoeae in five North American sexually transmitted disease clinics.J Clin Microbiol 34:1551-1552, 1996We compared a direct fluorescent monoclonal antibody (DFA) test with alternative enzymatic and fermention tests for identifying presumptive gonococcal isolates in a systematic sample from patients attending five sexually transmitted disease clinics in five cities.Fourteen (2.5%) of 556 isolates from three clinics were nonreactive with the DFA confirmatory reagent and reactive by both the Quad-Ferm and Rapid NH tests. The prevalence of DFA-nonreactive Neisseria gonorrhoeae isolates varies geographically and is independent of local methods for the identification of possible gonococci.On the basis of our findings, we recommend that for use in medicolegal and other instances in which a diagnosis of gonorrhea has the potential to have far-reaching effects, it is appropriate to test DFA reagent-nonreactive, oxidase-positive, gram-negative diplococci by alternative methods of gonococcal confirmation.Although the prevalence of such isolates could change, the fluorescent monoclonal antibody confirmation reagents remain useful for many clinical situations. Their ease of use and ready applicability for screening large numbers of isolates make them useful for many laboratories.

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Electrophoresis
Stains and Dyes

Substance Stain or Dye Comments Proteins Ponceau S Coomassie Brilliant Blue Silver Specific for Proteins Silver is a biohazard Lipoproteins Sudan Black B Oil Red O - Enzymes Enzyme substrate and a chromagen or fluorescent dye Reaction catalyzed by enzyme and color or fluorescence detected Hemoglobin Not needed Is intensely colored Nucleic Acids (DNA/RNA) Ethidium Bromide (EtBr) SyBr Green Silver EtBr is Carcinogenic SyBr Green is new - Introduced in 1995 Silver is a biohazard

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Fundamentals of Molecular Diagnostics
Detection

Detection techniques can vary in both direct and amplified methodologies and can include labeling either the probe or the target molecule of interest:Chemiluminescence: Release of light energy at the end of a chemical reaction that is detected by a luminometer. Uses a label such as acridinium ester. Electrophoresis: movement in a matrix such as a gel that is caused by an electrical field.Enzyme: Uses enzyme and substrate principles to label the appropriate target or probe. Can be combined with fluorescence or dyes for detection.Fluorescence: Molecules that emit light at a longer wavelength when excited at a shorter wavelength. Detection techniques include fluorescent staining of nucleic acids as well as fluorescent labeled probes that are measured in a fluorometer or with fluorescent polarization.Radioactivity: Uses a labeling technique where the radioactive label is then measured in a scintillation counter. The earliest assays utilized radioactive decay.

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Direct Nucleic Acid Tests

Southern Blot: Employs a restriction endonuclease enzyme to extract DNA from the cells. DNA detection is done using agarose gel electrophoresis.Fluorescent In Situ Hybridization (FISH): Uses RNA Northern Blot or DNA Southern Blot techniques to detect targets of interest in cytology/histology specimens or other nucleic acid variations. DNA fingerprinting: Restriction Fragment Length Polymorphism (RFLP): Cuts long DNA into shorter fragments before detection to isolate changes or polymorphisms. These can either be detected by Southern Blot or by Polymerase Chain Reaction (PCR).

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Pharmacology in the Clinical Lab: Therapeutic Drug Monitoring and Pharmacogenomics
FPIA

Fluoresence polarization immunoassay (FPIA) is also a homogenous competitive immunoassay. In this system, fluorescein-labeled drug competes with unlabeled drug from the patient's serum sample for binding sites on an antibody reagent. The patient's sample, presumably containing the therapeutic drug that is being monitored, and the fluorescein-labeled drug are added to a chamber containing antibody for that drug. The labeled and unlabeled drug will compete for binding sites on the antibody. The greater the amount of drug in the sample, the fewer the number of binding sites that are available for the labeled analyte, leaving a greater number of small, free fluorescein-labeled molecules in the solution.When the chamber is excited with plane polarized light, fluorescein will absorb the light and emit it at a higher wavelength as fluorescent light. A small, free fluorescein-labeled drug rotates randomly and faster than it would if it were bound to antibody, interrupting the light and leading to less emission of light. The larger antibody-drug-fluorescein complexes rotate slower and emit more light in the measured plane. A lower level of drug in the patient's sample results in greater emission of polarized light because there are more antibody-drug-fluorescein complexes present to produce light in the measured plane. A higher level of drug in the patient's sample results in a lower emission of polarized light. This inverse relationship between the concentration of the drug and the polarization units (signal) is illustrated in the image below.

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