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Chromosome Information and Courses from MediaLab, Inc.

These are the MediaLab courses that cover Chromosome and links to relevant pages within the course.

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Alpha Thalassemia
Defining Thalassemia

Thalassemias are named according to the affected gene or globin chain which is showing reduced or absent synthesis. Globin chain loci are found on chromosome 11 (Beta, Delta, Epsilon, and Gamma) chromosome 16 (Alpha, and Zeta)

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Defining Alpha Thalassemia

Alpha thalassemia demonstrates problems with alpha globin chain production. One to four loci that code for the alpha chain may be deleted from chromosome 16. The greater the number of loci deleted or inactivated, the greater the severity of the anemia which develops. Many different mutations exist that result from partial deletions of alpha genes. This unit of study deals only with the forms of alpha thalassemia that have entire loci deleted.

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Thalassemia results fromView Page
Alpha Thalassemia Major

Gene deletions that cause alpha thalassemia can be homozygous or heterozygous deletions. Homozygous alpha thalassemia (alpha thalassemia major), also known as hydrops fetalis, is a lethal hemoglobin disorder which usually results in stillborn infants. Both alpha chain loci on each chromosome of the pair are deleted, resulting in a total absence of alpha chains. These chains are needed for all normal hemoglobins. If born live, infants with alpha thalassemia major exhibit hepatosplenomegaly, ascites, edema, low birth weight and die within a few hours. Ethnic groups most commonly associated with this form of alpha thalassemia include primarily Southeast Asians and sometimes people of the islands in the Mediterranean.

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Alpha Thalassemia Minor

Deletion of two out of four alpha chain loci results in alpha thalassemia minor. The deletions may be homozygous (two on the same chromosome) or heterozygous (one from each of two chromosomes). Alpha thalassemia minor does not produce a clinical disease but may be discovered upon routine testing. Both the homozygous and heterozygous form are common in Southeast Asians. The homozygous form is also seen in American Blacks.

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Normal Chromosome 16

Chromosome 16 contains the genetic codes for the zeta and alpha hemoglobin chains.Each chromosome has two loci alpha chains 1 and 2. This equals a total of four loci of material coding for the alpha hemoglobin chain. See the image for a visual representation of these loci.In the genotypic notation of alpha thalassemia an "" represents the presence of an alpha locus. A "-" represents a deletion of a locus.The notation for the normal number of alpha loci is /. The amount of Hb A produced by this normal gene is 97-98 %.(drawing modified from Harmening, 1999)

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Chromosome 16 Alpha Thalassemia Silent Carrier

In the Silent Carrier (-/), only one loci is deleted or inactive. Hemoglobin A is still able to be made to its fullest amount, 97-98%.(drawing modified from Harmening, 1999)

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Chromosome 16 Alpha thalassemia Minor

In alpha thalassemia minor, two loci are deleted or inactive. Either homozygous or heterozygous states are possible.

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Chromosome 16 Alpha Thalassemia Intermedia

When three loci of alpha chains are deleted (--/-) or inactive, only 70-90% of Hemoglobin A is made. The excess beta chains that remain unpaired form the tetramers of Hemoglobin H.(drawing modified from Harmening, 1999)

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Chromosome 16 Alpha Thalassemia Major

The complete deletion of alpha chain loci (--/--) in alpha thalassemia major is incompatible with life. None of the vital alpha chains needed for every normal adult hemoglobin can be produced. (drawing modified from Harmening, 1999)

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Beta Thalassemia
Defining Thalassemias

Thalassemias are part of a group of hemoglobin synthesis disorders in which a defect exists in the rate of production of one or more of the globin chains. This defect results from either a heterozygous or homozygous deletion or inactivation of a globin chain gene.Thalassemias are named according to the affected gene or the globin chain that is showing reduced or absent synthesis.Globin chain loci are found on: chromosome 11 (beta, delta, epsilon, and gamma) chromosome 16 (alpha, and zeta)

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Defining Beta Thalassemia

Beta thalassemia demonstrates problems with beta globin chain production. One or two loci that code for the beta chain may be deleted from chromosome 11. The greater the number of loci deleted or inactivated, the greater the severity of the anemia which develops. Many different mutations exist that result from partial deletions of beta genes. This unit of study deals only with the forms of beta thalassemia that have entire loci deleted. Deletions of additional globin genes coded for on chromosome 11 can result in such combinations as delta-beta thalassemia.

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Beta Thalassemia States

Heterozygous states can express themselves as beta thalassemia minor, beta thalassemia intermedia, and silent carrier. The homozygous state is beta thalassemia major, though one type of beta thalassemia intermedia is caused by a homozygous state. A larger deletion on chromosome 11 results in delta-beta thalassemia, which also has heterozygous and homozygous states.

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Thalassemia results from which of the following?View Page
Chromosome 11 Beta Thalassemia Major

Beta thalassemia major, B0/B0 (two gene mutations, deletions or combination) results in very few to no beta chains being produced.Hemoglobin A levels are at or near 0%.(drawing modified from Harmening, 1999)

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Chromosome 11 Beta Thalassemia Silent Carrier B++s/B

The silent carrier state of beta thalassemia, B++s/B, involves one minor beta chain deletion or mutation. This state produces such a small drop in the level of beta chain synthesis that the alpha to beta chain ratio remains at a near normal state.Hemoglobin A levels remain normal (98% or higher).(drawing modified from Harmening, 1999)

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Normal Chromosome 11

Beta chain synthesis is controlled by two gene loci; one on each of chromosome 11. Chromosome 11 also carries the gene loci for delta chains, G-gamma and A-gamma chains and embryonic epsilon chains. Normal chromosome 11 is depicted in the image below. In the genotypic notation of beta thalassemia, a "+" represents a reduction in beta chain production whereas a "0" represents a complete deletion of a locus. The "+s" represents a silent carrier. Delta chain deletions may be present in combination with beta chain deletions.(drawing modified from Harmening, 1999)

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Chromosome 11 Beta Thalassemia Minor B+/B

In Beta thalassemia minor B+/B, one beta gene locus is partially deleted or inactive. With this deletion, only 85% to 95% of the normal level of Hb A is made.(drawing modified from Harmening, 1999)

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Chromosome 11 Beta Thalassemia Minor B0/B

In Beta thalassemia minor, B0/B, one beta gene locus is completely deleted or inactive.Hemoglobin A production is down to 70% - 85% in this state of beta thalassemia.(drawing modified from Harmening, 1999)

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Chromosome 11 Delta-Beta Thalassemia Minor

Occasionally, the beta chain gene deletion extends to include the locus for the delta chain gene. If this deletion occurs on only one chromosome of the pair, it creates delta-beta thalassemia minor. Delta-Beta 0/ BetaHb A and A2 will both be decreased and Hb F will be increased.(drawing modified from Harmening, 1999)

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Chromosome 11 Beta Thalassemia Intermedia B+s/B+s

In Beta thalassemia intermedia, B+s/B+s, both beta chain loci show a partial deletion or inactivation of the gene.Hemoglobin A is made to only 55% to 75% of its normal amount.(drawing modified from Harmening, 1999)

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Chromosome 11 Beta Thalassemia Intermedia B0/B+s

In Beta thalassemia intermedia B0/B+s, there is one completely deleted or inactive beta chain gene, while the other is partially deleted or inactive.This state also results in Hb A production of 55%-75% of normal.(drawing modified from Harmening, 1999)

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Chromosome 11 Delta-Beta Thalassemia Intermedia

Delta-beta thalassemia intermedia exists when both gene loci for beta and delta chains are deleted or inactive on one chromosome, while the other chromosome contains a beta chain gene that is partially deleted or inactive. Delta-Beta 0/ Beta+sIn this state the majority of hemoglobin will be Hb F, with very little Hb A and A2 present.(drawing modified from Harmening, 1999)

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Chromosome 11 Delta-Beta Thalassemia Major

Delta-beta thalassemia major, Delta-beta 0/ Delta-beta0, exists when both gene loci for beta and delta chains are completely deleted or inactive on both chromosomes. In this state, only Hb F can be made.(drawing modified from Harmening, 1999)

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Fundamentals of Molecular Diagnostics
Types of Nucleic Acid Synthesis

A gene is a hereditary unit or sequence of the nucleotide bases ACGT, occupying a fixed location or locus on the chromosome. It is these genes that carry all the information for life processes.DNA is rewritten into 3 types of RNA, each with a specific task: Messenger RNA (mRNA)carries the protein message to the cytoplasm. Ribosomal RNA (rRNA) is the location of protein synthesis. Transfer RNA (tRNA) is responsible for amino acid transport.Each 3-base nucleotide sequence (codon) codes for a specific amino acid. Some amino acids have more than one codon to direct their placement; this is termed degeneracy.

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Hereditary Hemochromatosis
HFE and Other Genes

A hemochromatosis gene, HFE, was identified in 1996. Mutations in the HFE gene are found in the majority of patients diagnosed with hereditary hemochromatosis (HH). The locus for the gene is on the long arm of chromosome 6 where it codes for a membrane protein, HFE. The exact mechanism of the role of HFE protein in iron metabolism is incompletely understood. It is thought that HFE, along with a second protein, beta-2 microglobin, interacts with transferrin receptors (TfR) on cell membranes. This interaction supresses the affinity of transferrin for TfR, thus lowering the uptake of transferrin--and its attached iron--into the cell. Transferrin receptors have been found on the surface of a variety of cells, with the greatest concentration on cell membranes of intestinal cells, hepatocytes, and RBC precursors. In addition to HFE, HH is also associated with mutations in other genes involved in iron homeostasis, including hemojuvelin (HJV), TfR, hepcidin, and ferroportin. Hepcidin production is reduced in HH due to all of these genetic causes, with a resulting increase in iron absorption. Mutations in HFE are the most common cause of HH.

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Introduction to the ABO Blood Group System
The H gene

Three separate loci (ABO, Hh, and Se) contain the genes that control the location and occurrence of the A and B antigens. Hh and Se genes are closely linked on chromosome 19. The precursor substance is acted upon by the H gene and is converted to H substance. The product of the H gene is an enzyme fucosyltransferase, responsible for attaching fucose to the terminal galactose of the precursor substance on the RBC membrane and thus forming H substance. There are only two recognized alleles at this locus: the active form, H, and an amorph, h. The H gene is a high-incidence gene. People who inherit hh are extremely rare. Since the h gene is amorphic, it does not act on the precursor substance.

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A, B, and O Genes

The ABO locus is on chromosome number 9. There are three major allelic genes and numerous rare genes. The three principle genes are A, B, and O. The A gene determines the product N-acetylgalactosaminyltranferase activity. The B gene determines galactosyltransferase activity. The O gene does not produce a functional enzyme. The enzyme products of the A and/or B genes act on H substance to convert it to A and/or B antigens. Not all H substance is converted; thus, all cells normally contain some H substance along with the A and/or B antigens. If both the A and B genes are present, some H antigen sites are converted to A antigen and other H antigen sites are converted to B antigen. (A single antigen site does not have both A and B antigens.) The O gene is an amorph and doesn’t act on H substance, therefore group O cells contain only H substance. See the diagram on the next page.

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Laws and Rules of the Florida Board of Clinical Laboratory Personnel
Description of Specialties (4)

Specialists in cytogenetics detect chromosome abnormalities and genetic disorders. Cytogenetics counseling may only be performed by an individual licenses in the cytogenetics specialty at the director level. Specialists in molecular genetics analyze DNA and RNA to find disease-related genotypes, mutations, and phenotypes in order to detect or predict disease and identify carriers. Specialists in histocompatibility test to determine tissue compatibility, prevent infections, and investigate and post-transplant problems. Techniques include blood typing, HLA typing, HLA antibody screening, disease markers, flow cytometry, crossmatching, HLA antibody identification, lymphocyte immunophenotyping, immunosuppressive drug assays, allogenic, isogeneic and autologous bone marrow processing and storage, mixed lymphocyte culture, stem cell culture, cell mediated assays, and assays for the presence of cytokines. Specialists in andrology and embryology examine gametes and embryos, including production, morphology, number, and motility, to address issues of fertility and infertility.

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Red Cell Disorders: Peripheral Blood Clues to Nonneoplastic Conditions
The RBC inclusions shown in the photograph represent which of the following?View Page

Variations in White Cell Morphology - Granulocytes
Barr Body

A Barr body appears as a small drumstick-like projection on one of the lobes of a some of the neutrophil in females. Barr bodies are attached to the nuclear lobe by a single narrow stalk which distinguishes them from other thicker projections, sometimes referred to as "clubs." Clubs have a thicker, and sometimes, a double stalk. This projection can be seen in both males and females and has no clinical significance. Barr bodies must also be distinguished from hair-like projections sometimes seen in the band form, following irradiation or in patients with a malignant tumor that has metastasized. Since Barr bodies are the morphological expression of the inactivated X chromosome, one Barr body can be seen in up to 3% of the neutrophils on a female's peripheral blood slide. In rare chromosome disorders in which three or more X chromosomes are present, two to three Barr bodies per neutrophil can be seen. Recognition of a Barr body in a neutrophil is important in order to avoid reporting it as abnormal unless two or more per neutrophil are seen.

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Barr Bodies may be Normal or Pathological

The Barr body is considered nonpathological unless associated with the rare chromosome disorders, in which case it would be pathological.

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Choose ALL of the answers that correctly complete the following statement: Barr bodies are important to recognize because theyView Page


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